Original title: Data-Based Clustering and Control of Similar Biological Systems
Peilin Zhang, Antonis Papachristodoulou, Idris Kempf · September 2026
Scientists want to control gene expression inside living cells. Doing this for large cell populations uses too much computing power because cells naturally differ from one another. To fix this, researchers created a shortcut based on how similar cells act. Instead of spending time learning exact biological models for every cell, their system watches input-output data to group cells with similar dynamics. Next, they built a leader-follower control setup. They design just one controller for an entire group and apply it to every cell in that cluster. This strategy sharply cuts down the calculations needed. It also keeps the closed-loop control stable. In gene expression simulations, this framework delivered scalable, reliable control across diverse cells.
Imagine organizing a sports practice for a hundred kids with varying skill levels. If you try to coach each kid individually, you'll be overwhelmed and can't give enough attention to anyone. By grouping kids with similar skills together, you can give one tailored lesson to each group, making coaching efficient and effective. In this paper, the systems are like the kids, clustered by their dynamic behavior, and the controllers are the coaches, applied per group to manage them collectively.
Industries like drug development and biomanufacturing need to control large cell populations, but current methods are computationally expensive and slow. This approach reduces the number of controllers needed, making it feasible to scale up production or experiments.
The approach is demonstrated only in simulations of gene expression dynamics, not in real experimental settings. It relies on input-output data for clustering, which may require substantial data collection.
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Data-Based Clustering and Control of Similar Biological Systems — Peilin Zhang, Antonis Papachristodoulou, Idris Kempf
Abstract licence: CC0
Explanation generated by Synthesis from the abstract — it is not the original paper. This is a preprint, so it hasn't necessarily been peer reviewed.